IL_4V5H_028

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4V5H|1|AA|A|572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_028 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1687

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

4V5H|1|AA|C|569
4V5H|1|AA|G|570
4V5H|1|AA|U|571
4V5H|1|AA|A|572
4V5H|1|AA|A|573
4V5H|1|AA|A|574
4V5H|1|AA|G|575
*
4V5H|1|AA|C|880
4V5H|1|AA|G|881

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AL

30S RIBOSOMAL PROTEIN S12