IL_4V5H_040

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_040 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1466

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5H|1|AA|G|887
4V5H|1|AA|G|888
4V5H|1|AA|A|889
4V5H|1|AA|G|890
4V5H|1|AA|U|891
4V5H|1|AA|A|892
4V5H|1|AA|C|893
4V5H|1|AA|G|894
*
4V5H|1|AA|U|905
4V5H|1|AA|A|906
4V5H|1|AA|A|907
4V5H|1|AA|A|908
4V5H|1|AA|A|909
4V5H|1|AA|C|910

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA