IL_4V5H_043

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V5H|1|AA|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_043 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1501

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5H|1|AA|G|933
4V5H|1|AA|C|934
4V5H|1|AA|A|935
*
4V5H|1|AA|U|1380
4V5H|1|AA|U|1381
4V5H|1|AA|C|1382
4V5H|1|AA|C|1383
4V5H|1|AA|C|1384

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AV

Transfer RNA; tRNA

Chain AX

MRNA