IL_4V5H_091

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V5H|1|BB|G|801, 4V5H|1|BB|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_091 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1194

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5H|1|BB|G|674
4V5H|1|BB|A|675
4V5H|1|BB|A|676
4V5H|1|BB|A|677
4V5H|1|BB|C|678
*
4V5H|1|BB|G|799
4V5H|1|BB|A|800
4V5H|1|BB|G|801
4V5H|1|BB|A|802
4V5H|1|BB|U|803
4V5H|1|BB|A|804
4V5H|1|BB|G|805
4V5H|1|BB|C|806

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L4

Chain BL

50S RIBOSOMAL PROTEIN L15