IL_4V5H_099

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGG*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_099 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.2124

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V5H|1|BB|G|856
4V5H|1|BB|G|857
4V5H|1|BB|G|858
*
4V5H|1|BB|U|919
4V5H|1|BB|A|920
4V5H|1|BB|C|921

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L30

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BY

50S RIBOSOMAL PROTEIN L27