IL_4V5H_100

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_100 not in the Motif Atlas

Geometric match to IL_4V9F_033

Geometric discrepancy: 0.1973

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|G|858
4V5H|1|BB|G|859
4V5H|1|BB|U|860
4V5H|1|BB|A|861
4V5H|1|BB|G|862
*
4V5H|1|BB|C|915
4V5H|1|BB|G|916
4V5H|1|BB|A|917
4V5H|1|BB|A|918
4V5H|1|BB|U|919

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L30

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S RIBOSOMAL PROTEIN L16

Chain BY

50S RIBOSOMAL PROTEIN L27