IL_4V5H_102

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_102 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.1611

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|G|864
4V5H|1|BB|C|865
4V5H|1|BB|A|866
4V5H|1|BB|C|867
4V5H|1|BB|U|868
*
4V5H|1|BB|A|909
4V5H|1|BB|A|910
4V5H|1|BB|A|911
4V5H|1|BB|C|912

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S RIBOSOMAL PROTEIN L16