IL_4V5H_106

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V5H|1|BB|C|995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_106 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.3013

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V5H|1|BB|C|994
4V5H|1|BB|C|995
4V5H|1|BB|A|996
*
4V5H|1|BB|U|1159
4V5H|1|BB|G|1160

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L30

Chain BJ

50S RIBOSOMAL PROTEIN L13

Chain BQ

50S RIBOSOMAL PROTEIN L20

Chain BR

50S RIBOSOMAL PROTEIN L21