IL_4V5H_113

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_113 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.2046

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5H|1|BB|G|1038
4V5H|1|BB|A|1039
4V5H|1|BB|A|1040
4V5H|1|BB|G|1041
*
4V5H|1|BB|C|1114
4V5H|1|BB|G|1115
4V5H|1|BB|G|1116
4V5H|1|BB|C|1117

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L36

Chain BM

50S RIBOSOMAL PROTEIN L16

Chain BW

50S RIBOSOMAL PROTEIN L25