IL_4V5H_114

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V5H|1|BB|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_114 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1795

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|C|1043
4V5H|1|BB|C|1044
4V5H|1|BB|C|1045
4V5H|1|BB|A|1046
4V5H|1|BB|G|1047
4V5H|1|BB|A|1048
4V5H|1|BB|C|1049
4V5H|1|BB|A|1050
4V5H|1|BB|G|1051
*
4V5H|1|BB|U|1108
4V5H|1|BB|C|1109
4V5H|1|BB|G|1110
4V5H|1|BB|A|1111
4V5H|1|BB|G|1112

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BG

50S RIBOSOMAL PROTEIN L6