IL_4V5H_117

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V5H|1|BB|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_117 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V5H|1|BB|C|1196
4V5H|1|BB|G|1197
4V5H|1|BB|U|1198
*
4V5H|1|BB|A|1247
4V5H|1|BB|G|1248
4V5H|1|BB|U|1249
4V5H|1|BB|G|1250

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L4

Chain BL

50S RIBOSOMAL PROTEIN L15

Chain BQ

50S RIBOSOMAL PROTEIN L20