IL_4V5H_175

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_175 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1294

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V5H|1|BB|C|2652
4V5H|1|BB|U|2653
4V5H|1|BB|A|2654
4V5H|1|BB|G|2655
4V5H|1|BB|U|2656
4V5H|1|BB|A|2657
4V5H|1|BB|C|2658
*
4V5H|1|BB|G|2663
4V5H|1|BB|G|2664
4V5H|1|BB|A|2665
4V5H|1|BB|C|2666
4V5H|1|BB|C|2667
4V5H|1|BB|G|2668

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BG

50S RIBOSOMAL PROTEIN L6