IL_4V5J_182

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V5J|1|CA|U|244, 4V5J|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_182 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0657

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V5J|1|CA|C|242
4V5J|1|CA|A|243
4V5J|1|CA|U|244
4V5J|1|CA|C|245
4V5J|1|CA|A|246
4V5J|1|CA|G|247
*
4V5J|1|CA|C|277
4V5J|1|CA|G|278
4V5J|1|CA|A|279
4V5J|1|CA|C|280
4V5J|1|CA|G|281
4V5J|1|CA|A|282
4V5J|1|CA|C|283
4V5J|1|CA|G|284

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17