IL_4V5J_262

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

4V5J|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_262 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3588

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V5J|1|DA|G|880
4V5J|1|DA|G|881
4V5J|1|DA|G|882
4V5J|1|DA|G|883
*
4V5J|1|DA|C|893
4V5J|1|DA|C|894
4V5J|1|DA|U|895
4V5J|1|DA|A|896
4V5J|1|DA|C|897

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DZ

50S RIBOSOMAL PROTEIN L25