IL_4V5K_194

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_194 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0688

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5K|1|CA|G|887
4V5K|1|CA|G|888
4V5K|1|CA|A|889
4V5K|1|CA|G|890
4V5K|1|CA|U|891
4V5K|1|CA|A|892
4V5K|1|CA|C|893
4V5K|1|CA|G|894
*
4V5K|1|CA|U|905
4V5K|1|CA|G|906
4V5K|1|CA|A|907
4V5K|1|CA|A|908
4V5K|1|CA|A|909
4V5K|1|CA|C|910

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17