IL_4V5M_011

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V5M|1|AA|U|244, 4V5M|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0967

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V5M|1|AA|C|242
4V5M|1|AA|A|243
4V5M|1|AA|U|244
4V5M|1|AA|C|245
4V5M|1|AA|A|246
4V5M|1|AA|G|247
*
4V5M|1|AA|C|277
4V5M|1|AA|G|278
4V5M|1|AA|A|279
4V5M|1|AA|C|280
4V5M|1|AA|G|281
4V5M|1|AA|A|282
4V5M|1|AA|C|283
4V5M|1|AA|G|284

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17