IL_4V5M_026

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_026 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.1857

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V5M|1|AA|U|605
4V5M|1|AA|G|606
4V5M|1|AA|A|607
4V5M|1|AA|A|608
4V5M|1|AA|A|609
4V5M|1|AA|G|610
4V5M|1|AA|A|611
4V5M|1|AA|C|612
*
4V5M|1|AA|G|628
4V5M|1|AA|G|629
4V5M|1|AA|G|630
4V5M|1|AA|G|631
4V5M|1|AA|A|632
4V5M|1|AA|G|633

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AP

30S RIBOSOMAL PROTEIN S16