IL_4V5M_031

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V5M|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1662

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5M|1|AA|G|683
4V5M|1|AA|A|684
4V5M|1|AA|G|685
4V5M|1|AA|U|686
4V5M|1|AA|A|687
4V5M|1|AA|G|688
*
4V5M|1|AA|C|699
4V5M|1|AA|G|700
4V5M|1|AA|C|701
4V5M|1|AA|A|702
4V5M|1|AA|G|703
4V5M|1|AA|A|704
4V5M|1|AA|U|705
4V5M|1|AA|A|706
4V5M|1|AA|C|707

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2