IL_4V5M_042

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V5M|1|AA|C|1200, 4V5M|1|AA|A|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_042 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1434

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V5M|1|AA|G|1057
4V5M|1|AA|G|1058
*
4V5M|1|AA|U|1199
4V5M|1|AA|C|1200
4V5M|1|AA|A|1201
4V5M|1|AA|G|1202
4V5M|1|AA|C|1203

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z