IL_4V5M_050

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V5M|1|AA|C|1400, 4V5M|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_050 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0975

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V5M|1|AA|C|1399
4V5M|1|AA|C|1400
4V5M|1|AA|G|1401
*
4V5M|1|AA|C|1501
4V5M|1|AA|A|1502
4V5M|1|AA|A|1503
4V5M|1|AA|G|1504

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

MRNA