3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GGA*UAACC
Length
8 nucleotides
Bulged bases
4V5M|1|BA|G|776, 4V5M|1|BA|A|788, 4V5M|1|BA|A|789, 4V5M|1|BA|C|790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_080 not in the Motif Atlas
Homologous match to IL_7A0S_021
Geometric discrepancy: 0.1351
The information below is about IL_7A0S_021
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

4V5M|1|BA|G|775
4V5M|1|BA|G|776
4V5M|1|BA|A|777
*
4V5M|1|BA|U|787
4V5M|1|BA|A|788
4V5M|1|BA|A|789
4V5M|1|BA|C|790
4V5M|1|BA|C|791

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B7
50S RIBOSOMAL PROTEIN L34
Chain BD
50S RIBOSOMAL PROTEIN L2
Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BW
50S RIBOSOMAL PROTEIN L22

Coloring options:


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