IL_4V5M_084

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_084 not in the Motif Atlas

Geometric match to IL_7RQB_027

Geometric discrepancy: 0.1364

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V5M|1|BA|U|858
4V5M|1|BA|G|859
4V5M|1|BA|U|860
4V5M|1|BA|A|861
4V5M|1|BA|G|862
*
4V5M|1|BA|C|915
4V5M|1|BA|G|916
4V5M|1|BA|A|917
4V5M|1|BA|A|918
4V5M|1|BA|G|919

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S RIBOSOMAL PROTEIN L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S RIBOSOMAL PROTEIN L16