IL_4V5M_085
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5M_085 not in the Motif Atlas
- Homologous match to IL_7A0S_028
- Geometric discrepancy: 0.1722
- The information below is about IL_7A0S_028
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
4V5M|1|BA|G|862
4V5M|1|BA|A|863
*
4V5M|1|BA|U|913
4V5M|1|BA|C|914
4V5M|1|BA|C|915
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: