IL_4V5M_100
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 4V5M|1|BA|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5M_100 not in the Motif Atlas
- Geometric match to IL_1MMS_002
- Geometric discrepancy: 0.1336
- The information below is about IL_1MMS_002
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
4V5M|1|BA|G|1087
4V5M|1|BA|A|1088
4V5M|1|BA|G|1089
4V5M|1|BA|U|1090
4V5M|1|BA|G|1091
*
4V5M|1|BA|C|1100
4V5M|1|BA|U|1101
4V5M|1|BA|C|1102
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B9
- 50S RIBOSOMAL PROTEIN L36
- Chain BH
- 50S RIBOSOMAL PROTEIN L6
- Chain BK
- 50S RIBOSOMAL PROTEIN L11
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