3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_106 not in the Motif Atlas
Homologous match to IL_7RQB_050
Geometric discrepancy: 0.1704
The information below is about IL_7RQB_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4V5M|1|BA|G|1310
4V5M|1|BA|G|1311
4V5M|1|BA|U|1312
4V5M|1|BA|U|1313
*
4V5M|1|BA|A|1603
4V5M|1|BA|C|1604

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B7
50S RIBOSOMAL PROTEIN L34
Chain BX
50S RIBOSOMAL PROTEIN L23

Coloring options:


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