3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
UCAAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_126 not in the Motif Atlas
Homologous match to IL_7RQB_074
Geometric discrepancy: 0.235
The information below is about IL_7RQB_074
Detailed Annotation
UAA/GAN with extra pair
Broad Annotation
No text annotation
Motif group
IL_90318.1
Basepair signature
cWW-tSH-L-R-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4V5M|1|BA|U|1851
4V5M|1|BA|C|1852
4V5M|1|BA|A|1853
4V5M|1|BA|A|1854
4V5M|1|BA|G|1855
*
4V5M|1|BA|C|1887
4V5M|1|BA|G|1888
4V5M|1|BA|A|1889
4V5M|1|BA|A|1890
4V5M|1|BA|G|1891

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain AV
Transfer RNA; tRNA
Chain BD
50S RIBOSOMAL PROTEIN L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0952 s