IL_4V5M_131

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V5M|1|BA|C|2055, 4V5M|1|BA|C|2612, 4V5M|1|BA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_131 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.145

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5M|1|BA|A|2054
4V5M|1|BA|C|2055
4V5M|1|BA|G|2056
4V5M|1|BA|A|2057
*
4V5M|1|BA|U|2611
4V5M|1|BA|C|2612
4V5M|1|BA|U|2613
4V5M|1|BA|A|2614
4V5M|1|BA|U|2615

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BW

50S RIBOSOMAL PROTEIN L22