3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_138 not in the Motif Atlas
Homologous match to IL_3U4M_003
Geometric discrepancy: 0.1676
The information below is about IL_3U4M_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75283.2
Basepair signature
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
Number of instances in this motif group
3

Unit IDs

4V5M|1|BA|G|2124
4V5M|1|BA|G|2125
4V5M|1|BA|A|2126
4V5M|1|BA|G|2127
*
4V5M|1|BA|C|2161
4V5M|1|BA|G|2162
4V5M|1|BA|C|2163
4V5M|1|BA|C|2164
4V5M|1|BA|G|2165
4V5M|1|BA|G|2166
4V5M|1|BA|U|2167
4V5M|1|BA|G|2168
4V5M|1|BA|A|2169
4V5M|1|BA|A|2170
4V5M|1|BA|A|2171
4V5M|1|BA|U|2172
4V5M|1|BA|A|2173
4V5M|1|BA|C|2174

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain AV
Transfer RNA; tRNA
Chain BC
50S RIBOSOMAL PROTEIN L1

Coloring options:


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