IL_4V5M_138
3D structure
- PDB id
- 4V5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.8 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5M_138 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.1676
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
4V5M|1|BA|G|2124
4V5M|1|BA|G|2125
4V5M|1|BA|A|2126
4V5M|1|BA|G|2127
*
4V5M|1|BA|C|2161
4V5M|1|BA|G|2162
4V5M|1|BA|C|2163
4V5M|1|BA|C|2164
4V5M|1|BA|G|2165
4V5M|1|BA|G|2166
4V5M|1|BA|U|2167
4V5M|1|BA|G|2168
4V5M|1|BA|A|2169
4V5M|1|BA|A|2170
4V5M|1|BA|A|2171
4V5M|1|BA|U|2172
4V5M|1|BA|A|2173
4V5M|1|BA|C|2174
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
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