3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5M_147 not in the Motif Atlas
Homologous match to IL_7RQB_095
Geometric discrepancy: 0.151
The information below is about IL_7RQB_095
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

4V5M|1|BA|C|2466
4V5M|1|BA|C|2467
4V5M|1|BA|G|2468
4V5M|1|BA|A|2469
4V5M|1|BA|G|2470
*
4V5M|1|BA|C|2480
4V5M|1|BA|G|2481
4V5M|1|BA|G|2482
4V5M|1|BA|C|2483
4V5M|1|BA|G|2484

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B9
50S RIBOSOMAL PROTEIN L36
Chain BQ
50S RIBOSOMAL PROTEIN L16
Chain BZ
50S RIBOSOMAL PROTEIN L25

Coloring options:


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