IL_4V5M_156

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V5M|1|BA|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_156 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1156

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V5M|1|BA|U|2687
4V5M|1|BA|U|2688
4V5M|1|BA|U|2689
4V5M|1|BA|C|2690
4V5M|1|BA|C|2691
*
4V5M|1|BA|G|2718
4V5M|1|BA|G|2719
4V5M|1|BA|U|2720
4V5M|1|BA|A|2721
4V5M|1|BA|G|2722

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19