IL_4V5M_179

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V5M|1|BA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_179 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1786

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5M|1|BA|C|844
4V5M|1|BA|G|845
4V5M|1|BA|C|846
4V5M|1|BA|U|847
4V5M|1|BA|G|848
4V5M|1|BA|A|849
4V5M|1|BA|C|850
*
4V5M|1|BA|G|927
4V5M|1|BA|G|928
4V5M|1|BA|U|930
4V5M|1|BA|G|931
4V5M|1|BA|G|932
4V5M|1|BA|A|933
4V5M|1|BA|G|934

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L30