IL_4V5M_180

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

4V5M|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_180 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3289

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5M|1|BA|G|880
4V5M|1|BA|G|881
4V5M|1|BA|G|882
4V5M|1|BA|G|883
*
4V5M|1|BA|C|893
4V5M|1|BA|C|894
4V5M|1|BA|U|895
4V5M|1|BA|A|896
4V5M|1|BA|C|897

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BZ

50S RIBOSOMAL PROTEIN L25