IL_4V5O_007

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_007 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.1375

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V5O|1|AA|G|105
4V5O|1|AA|U|106
4V5O|1|AA|U|107
4V5O|1|AA|A|108
*
4V5O|1|AA|U|293
4V5O|1|AA|U|294
4V5O|1|AA|U|295
4V5O|1|AA|C|296

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN

Chain AW

40S RIBOSOMAL PROTEIN S4