IL_4V5O_017

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GAG*CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_017 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1251

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V5O|1|AA|G|354
4V5O|1|AA|A|355
4V5O|1|AA|G|356
*
4V5O|1|AA|C|367
4V5O|1|AA|G|368
4V5O|1|AA|A|369
4V5O|1|AA|U|370
4V5O|1|AA|U|371
4V5O|1|AA|C|372

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain AL

40S RIBOSOMAL PROTEIN S12

Chain AW

40S RIBOSOMAL PROTEIN S4