IL_4V5O_020

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_020 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.161

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V5O|1|AA|C|435
4V5O|1|AA|C|436
4V5O|1|AA|A|437
4V5O|1|AA|A|438
4V5O|1|AA|U|439
*
4V5O|1|AA|A|452
4V5O|1|AA|G|453

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain AP

RPS24E

Chain AW

40S RIBOSOMAL PROTEIN S4