IL_4V5O_022

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

4V5O|1|AA|A|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_022 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.2799

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V5O|1|AA|A|473
4V5O|1|AA|G|474
*
4V5O|1|AA|C|498
4V5O|1|AA|A|499
4V5O|1|AA|U|500

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AX

RPS30E