IL_4V5O_045
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4V5O|1|AA|C|1068, 4V5O|1|AA|U|1070, 4V5O|1|AA|G|1072
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5O_045 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.2068
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5O|1|AA|C|1012
4V5O|1|AA|G|1013
4V5O|1|AA|A|1014
*
4V5O|1|AA|U|1067
4V5O|1|AA|C|1068
4V5O|1|AA|U|1069
4V5O|1|AA|U|1070
4V5O|1|AA|U|1071
4V5O|1|AA|G|1072
4V5O|1|AA|G|1073
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A6
- RPS27E
- Chain AE
- RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
- Chain AH
- RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN
- Chain AL
- 40S RIBOSOMAL PROTEIN S12
- Chain AO
- RPS13E
- Chain AQ
- RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN
Coloring options: