IL_4V5O_047

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AAU*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_047 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2503

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V5O|1|AA|A|1030
4V5O|1|AA|A|1031
4V5O|1|AA|U|1032
*
4V5O|1|AA|G|1037
4V5O|1|AA|U|1038

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A3

RPS7E

Chain A4

40S RIBOSOMAL PROTEIN S3A

Chain A6

RPS27E