IL_4V5O_063

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_063 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.3098

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V5O|1|AA|U|1262
4V5O|1|AA|G|1263
4V5O|1|AA|G|1264
*
4V5O|1|AA|C|1295
4V5O|1|AA|G|1296
4V5O|1|AA|A|1297

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AB

RPS0E

Chain AC

KH DOMAIN CONTAINING PROTEIN

Chain AE

RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN

Chain AV

RPS17E