IL_4V5O_077

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

4V5O|1|AA|A|1709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_077 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.1254

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V5O|1|AA|C|1616
4V5O|1|AA|G|1617
4V5O|1|AA|C|1618
*
4V5O|1|AA|G|1707
4V5O|1|AA|A|1708
4V5O|1|AA|A|1709
4V5O|1|AA|G|1710

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AF

EIF1

Chain AL

40S RIBOSOMAL PROTEIN S12