IL_4V5O_082

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UUCU*AAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_082 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2479

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V5O|1|AA|U|1646
4V5O|1|AA|U|1647
4V5O|1|AA|C|1648
4V5O|1|AA|U|1649
*
4V5O|1|AA|A|1676
4V5O|1|AA|A|1677
4V5O|1|AA|U|1678
4V5O|1|AA|A|1679

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AY

RPS6E