IL_4V5O_083

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGGAC*GAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_083 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1732

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V5O|1|AA|U|1649
4V5O|1|AA|G|1650
4V5O|1|AA|G|1651
4V5O|1|AA|A|1652
4V5O|1|AA|C|1653
*
4V5O|1|AA|G|1672
4V5O|1|AA|A|1673
4V5O|1|AA|A|1674
4V5O|1|AA|A|1675
4V5O|1|AA|A|1676

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AY

RPS6E