IL_4V5O_086

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAAA*UGACA

Length

9 nucleotides

Bulged bases

4V5O|1|BA|A|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

32

Unit IDs

4V5O|1|BA|U|37
4V5O|1|BA|A|38
4V5O|1|BA|A|39
4V5O|1|BA|A|40
*
4V5O|1|BA|U|458
4V5O|1|BA|G|459
4V5O|1|BA|A|460
4V5O|1|BA|C|461
4V5O|1|BA|A|462

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BD

RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN

Chain BW

40S RIBOSOMAL PROTEIN S4