IL_09705.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_5J7L_327	5J7L	0.6015	0	Other IL	DA	LSU rRNA	C	2103	C	2104	U	2105	U	2106	*	A	2183	A	2184	U	2185	G	2186	cWW	ncWW	ntHS	ncWW
2	IL_4ZNP_002	4ZNP	0.3679	0	Double sheared	A	ZMP/ZTP riboswitch	G	9	G	10	A	11	C	12	*	G	37	G	38	A	39	C	40	cWW	tSH	tHS	cWW
3	IL_4V88_396	4V88	0.2896	0	Double sheared	A6	SSU rRNA	C	186	G	187	A	188	C	189	*	G	196	A	197	A	198	G	199	cWW	tSH	tHS	cWW
4	IL_4WF9_016	4WF9	0.2367	0	Double sheared	X	LSU rRNA	U	597	G	598	A	599	U	600	*	A	581	G	582	A	583	G	584	cWW	tSH	tHS	cWW
5	IL_5J7L_256	5J7L	0.2479	0	Double sheared	DA	LSU rRNA	U	554	G	555	A	556	C	557	*	G	536	G	537	A	538	G	539	cWW	tSH	tHS	cWW
6	IL_4V5O_163	4V5O	0.2768	0	Double sheared	BA	SSU rRNA	U	1640	G	1641	A	1642	A	1643	*	U	1682	A	1683	A	1684	A	1685	cWW	tSH	tHS	cWW
7	IL_4V88_471	4V88	0.2994	0	Double sheared	A6	SSU rRNA	U	1669	G	1670	A	1671	G	1672	*	C	1729	A	1730	A	1731	A	1732	cWW	tSH	tHS	cWW
8	IL_5AOX_003	5AOX	0.2388	0	Double sheared	C	ALU JO CONSENSUS RNA	A	105	G	106	A	107	C	108	*	G	58	G	59	A	60	U	61	cWW	tSH	tHS	cWW
9	IL_4KZD_002	4KZD	0.2214	0	Double sheared	R	RNA (84-MER)	U	71	A	72	A	73	C	74	*	G	11	A	12	A	13	A	14	cWW	tSH	tHS	cWW
10	IL_3D0U_002	3D0U	0.2020	0	Double sheared	A	Lysine Riboswitch RNA	C	67	G	68	A	69	G	70	*	C	16	G	17	A	18	G	19	cWW	tSH	tHS	cWW
11	IL_4V8P_162	4V8P	0.2763	0	Double sheared	D1	LSU rRNA	C	138	A	139	A	140	C	141	*	G	125	A	126	A	127	G	128	cWW	tSH		cWW
12	IL_4LFB_060	4LFB	0.1844	0	Double sheared	A	SSU rRNA	U	1481	G	1482	A	1483	C	1484	*	G	1416	G	1417	A	1418	G	1419	cWW	tSH	tHS	cWW
13	IL_5BTP_004	5BTP	0.2261	0	Double sheared	B	ZMP/ZTP riboswitch	U	12	G	13	A	14	C	15	*	G	41	A	42	A	43	G	44	cWW	tSH	tHS	cWW
14	IL_4XWF_001	4XWF	0.2211	0	Double sheared	A	ZMP/ZTP riboswitch	U	7	G	8	A	9	C	10	*	G	36	G	37	A	38	G	39	cWW	tSH	tHS	cWW
15	IL_4V8P_164	4V8P	0.2278	0	Double sheared	D1	LSU rRNA	C	162	A	163	A	164	C	165	*	G	254	G	255	A	256	G	257	cWW	tSH	ntHS	cWW
16	IL_4IOA_058	4IOA	0.2017	0	Double sheared	X	LSU rRNA	U	1530	C	1531	A	1532	G	1533	*	C	1491	A	1492	A	1493	G	1494	cWW		tHS	cWW
17	IL_4WF9_087	4WF9	0.1147	0	Double sheared	X	LSU rRNA	C	2377	G	2378	A	2379	G	2380	*	C	2391	G	2392	A	2393	G	2394	cWW	tSH	tHS	cWW
18	IL_5J7L_333	5J7L	0.0000	0	Double sheared	DA	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
19	IL_4Y4O_264	4Y4O	0.0962	0	Double sheared	2A	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
20	IL_4IOA_083	4IOA	0.1189	0	Double sheared	X	LSU rRNA	C	2329	G	2330	A	2331	G	2332	*	C	2343	G	2344	A	2345	G	2346	cWW	tSH	tHS	cWW
21	IL_1SAQ_002	1SAQ	0.1654	0	Double sheared	A+B	RNA (8-mer)	C	103	G	104	A	105	G	106	*	C	111	G	112	A	113	G	114	cWW	tSH	tHS	cWW
22	IL_1SA9_002	1SA9	0.1859	0	Double sheared	C+D	RNA (8-mer)	C	203	G	204	A	205	G	206	*	C	211	G	212	A	213	G	214	cWW	tSH	ntHS	cWW
23	IL_4V5O_086	4V5O	0.2281	1	Double sheared	BA	SSU rRNA	U	458	G	459	C	461	A	462	*	U	37	A	38	A	39	A	40	cWW	tSH	tHS	cWW
24	IL_4V8P_275	4V8P	0.3316	2	Double sheared	D1	LSU rRNA	G	3128	G	3129	A	3131	G	3133	*	C	2993	G	2994	A	2995	C	2996	cWW	tSH	tHS	cWW
25	IL_5TBW_114	5TBW	0.3462	2	Double sheared	1	LSU rRNA	A	3139	G	3140	A	3141	G	3144	*	C	3004	A	3005	A	3006	U	3007	cWW	tSH	tHS	cWW
26	IL_4V8P_290	4V8P	0.3032	0	Double sheared	D1	LSU rRNA	A	3300	G	3301	A	3302	G	3303	*	C	3316	G	3317	A	3318	U	3319	cWW	tSH	tHS	cWW
27	IL_4V9F_100	4V9F	0.2945	0	Double sheared	0	LSU rRNA	C	2873	G	2874	A	2875	G	2876	*	C	2881	G	2882	A	2883	G	2884	cWW	tSH	tHS	cWW
28	IL_3DIL_002	3DIL	0.3460	0	Double sheared	A	RNA (174-MER)	C	70	G	71	A	72	G	73	*	C	19	G	20	A	21	G	22	cWW	tSH	tHS	cWW
29	IL_4V88_468	4V88	0.2538	0	Double sheared	A6	SSU rRNA	C	1653	G	1654	A	1655	U	1656	*	A	1744	G	1745	A	1746	G	1747	cWW	tSH	tHS	cWW
30	IL_5J7L_062	5J7L	0.3949	0	Double sheared	AA	SSU rRNA	U	1481	G	1482	A	1483	C	1484	*	G	1416	G	1417	A	1418	G	1419	cWW	tSH	tHS	cWW
31	IL_5TBW_135	5TBW	0.6588	0	Double sheared; A in syn	1	LSU rRNA	C	3360	G	3361	A	3362	U	3363	*	A	3342	G	3343	A	3344	G	3345	cWW	ntsS		cWW
32	IL_4WF9_054	4WF9	0.6744	1	Other IL	X	LSU rRNA	C	1461	G	1462	A	1463	G	1465	*	C	1624	U	1625	A	1626	G	1627	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	9
UGAC*GGAG	4
CGAU*AGAG	2
CCUU*AAUG	1
GGAC*GGAC	1
CGAC*GAAG	1
UGAU*AGAG	1
UGAA*UAAA	1
UGAG*CAAA	1
AGAC*GGAU	1
UAAC*GAAA	1
CAAC*GAAG	1
UGAC*GAAG	1
CAAC*GGAG	1
UCAG*CAAG	1
UGACA*UAAA	1
GGAAAG*CGAC	1
AGAACG*CAAU	1
AGAG*CGAU	1
CGAUG*CUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	19
GA*AA	4
AA*AA	2
CU*AU	1
AA*GA	1
CA*AA	1
GAC*AA	1
GAAA*GA	1
GAAC*AA	1
GAU*UA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_09705.2 Version IL_09705.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_09705.2 Version IL_09705.2 of this group appears in releases 3.3 to 3.11

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Csv

Json