IL_4V5O_096

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUA*UGAUC

Length

8 nucleotides

Bulged bases

4V5O|1|BA|A|258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95485.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V5O|1|BA|G|199
4V5O|1|BA|U|200
4V5O|1|BA|A|201
*
4V5O|1|BA|U|256
4V5O|1|BA|G|257
4V5O|1|BA|A|258
4V5O|1|BA|U|259
4V5O|1|BA|C|260

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B2

40S RIBOSOMAL PROTEIN S8

Chain BW

40S RIBOSOMAL PROTEIN S4

Chain BY

RPS6E