Motif IL_95485.2 Version IL_95485.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	2-3	2-6	3-6	4-5
1	IL_5TBW_056	5TBW	0.3697	1	Major groove platform with extra cWW	1	LSU rRNA	G	1262	G	1264	U	1265	G	1266	*	C	1275	U	1276	C	1277	cWW	ncSH		cWw	ncWW
2	IL_1MMS_002	1MMS	0.2436	1	Major groove platform with extra cWW	C	LSU rRNA	G	1087	G	1089	U	1090	G	1091	*	C	1100	U	1101	C	1102	cWW	cSH		cWw	cWW
3	IL_5D8H_003	5D8H	0.2244	1	Major groove platform with extra cWW	A	LSU rRNA	G	1197	G	1199	U	1200	G	1201	*	C	1210	U	1211	C	1212	cWW	cSH		cWw	cWW
4	IL_4Y4O_199	4Y4O	0.0000	0	Major groove platform with extra cWW (H)	2A	LSU rRNA	G	738	G	739	U	740	G	741	*	C	756	U	757	C	758	cWW	cSH		cWw	cWW
5	IL_4IOA_018	4IOA	0.0720	0		X	LSU rRNA	G	751	G	752	U	753	G	754	*	C	769	U	770	C	771	cWW	cSH	ntSH	cWw	cWW
6	IL_4V9F_028	4V9F	0.1345	0	Major groove platform with extra cWW	0	LSU rRNA	G	830	U	831	U	832	G	833	*	C	849	U	850	C	851	cWW	cSH		cWw	cWW
7	IL_4V8P_195	4V8P	0.1566	0	Major groove platform with extra cWW (H)	D1	LSU rRNA	G	894	A	895	U	896	A	897	*	U	913	U	914	C	915	cWW	cSH		cWw	cWW
8	IL_5TBW_031	5TBW	0.1802	0	Major groove platform with extra cWW	1	LSU rRNA	G	869	G	870	U	871	U	872	*	A	888	U	889	C	890	cWW	cSH		cWw	cWW
9	IL_4V88_397	4V88	0.2054	1	Major groove platform with extra cWW	A6	SSU rRNA	U	259	U	261	U	262	C	263	*	G	204	U	205	A	206	cWW	cSH		cWw	cWW
10	IL_4V5O_096	4V5O	0.2170	1	Major groove platform with extra cWW (H)	BA	SSU rRNA	U	256	G	257	U	259	C	260	*	G	199	U	200	A	201	cWW	ncSH		cWw	cWW
11	IL_4Y4O_269	4Y4O	0.2738	1	Major groove minor groove platform with extra cWW (H)	2A	LSU rRNA	G	2489	G	2490	U	2492	U	2493	*	A	2459	U	2460	C	2461	cWW	ncSH	ncWB	cWw	cWW
12	IL_4V8P_267	4V8P	0.3915	1		D1	LSU rRNA	U	2846	U	2847	U	2849	U	2850	*	G	2816	U	2817	G	2818	cWW			cWw	cWW
13	IL_5TBW_105	5TBW	0.3827	1	Major groove minor groove platform with extra cWW	1	LSU rRNA	U	2858	U	2859	U	2861	U	2862	*	G	2828	U	2829	G	2830	cWW	ncWH		cWw	cWW
14	IL_4V9F_003	4V9F	0.4542	0	Major groove platform with extra cWW	0	LSU rRNA	C	440	A	441	A	442	C	443	*	G	39	C	40	G	41	cWW	cSH	cWWa	ncWW	cWW
15	IL_3PDR_004	3PDR	0.5098	0	Major groove platform with extra cWW	X	M-box riboswitch (ykoK leader)	C	33	U	34	C	35	C	36	*	G	149	U	150	G	151	cWW	cSH	cwW		cWW
16	IL_1XJR_001	1XJR	0.7557	1	Isolated basepair with bulged bases	A	s2m RNA	C	9	C	10	A	12	G	13	*	C	39	A	40	G	41	cWW				cWW
17	IL_3P49_009	3P49	0.7499	1		A	Glycine riboswitch	C	109	G	110	A	112	G	113	*	C	142	A	143	G	144	ncWW			ntHS	cWW
18	IL_3P49_006	3P49	0.7276	1		A	Glycine riboswitch	C	34	G	35	A	37	G	38	*	C	51	A	52	G	53	ncWW			ntHS	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGUG*CUC	3
GGUG*CUC	2
UUUUU*GUG	2
CGAAG*CAG	2
GUUG*CUC	1
GAUA*UUC	1
GGUU*AUC	1
UUUUC*GUA	1
UGAUC*GUA	1
GGUUU*AUC	1
CAAC*GCG	1
CUCC*GUG	1
CCGAG*CAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGU*U	3
GU*U	3
UUU*U	3
GAA*A	2
UU*U	1
AU*U	1
GAU*U	1
GUU*U	1
AA*C	1
UC*U	1
CGA*A	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform with extra cWW (8)
(4)
Major groove platform with extra cWW (H) (3)
Isolated basepair with bulged bases (1)
Major groove minor groove platform with extra cWW (H) (1)
Major groove minor groove platform with extra cWW (1)
Basepair signature: cWW-cSH-cWW-cWW
Heat map statistics: Min 0.07 | Avg 0.44 | Max 0.87

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Coloring options: Nucleotide numbers

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