IL_4V5O_118

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AAAAU*ACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_118 not in the Motif Atlas

Geometric match to IL_8C3A_102

Geometric discrepancy: 0.3701

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V5O|1|BA|A|688
4V5O|1|BA|A|689
4V5O|1|BA|A|690
4V5O|1|BA|A|691
4V5O|1|BA|U|692
*
4V5O|1|BA|A|710
4V5O|1|BA|C|711
4V5O|1|BA|U|712
4V5O|1|BA|U|713

Current chains

Chain BA

18S RRNA

Nearby chains