IL_4V5O_120

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UUAC*GGAAUA

Length

10 nucleotides

Bulged bases

4V5O|1|BA|A|786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_37811.2

Basepair signature

cWW-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5O|1|BA|U|728
4V5O|1|BA|U|729
4V5O|1|BA|A|730
4V5O|1|BA|C|731
*
4V5O|1|BA|G|784
4V5O|1|BA|G|785
4V5O|1|BA|A|786
4V5O|1|BA|A|787
4V5O|1|BA|U|788
4V5O|1|BA|A|789

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B3

RPS7E

Chain BH

RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN

Chain BL

40S RIBOSOMAL PROTEIN S12

Chain BQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN