Motif IL_37811.2 Version IL_37811.2 of this group appears in releases 3.8 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-7	2-8	3-6	4-5
1	IL_3BNR_008	3BNR	0.8074	0	Minor groove platform related	C+D	A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three	C	7	A	8	C	9	C	10	*	G	13	C	14	A	15	A	16	G	17	cWW		cwW	ncwW	cWW
2	IL_3BNT_005	3BNT	0.7374	0	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6\|\|\|\|4_665	A	7\|\|\|\|4_665	C	8\|\|\|\|4_665	C	9\|\|\|\|4_665	*	G	14	C	15	A	16	A	17	G	18	cWW		cwW	ncBW	cWW
3	IL_3BNT_002	3BNT	0.7374	0	Tandem non-canonical cWW pairs	A	A site of human mitochondrial ribosome	C	6	A	7	C	8	C	9	*	G	14\|\|\|\|4_665	C	15\|\|\|\|4_665	A	16\|\|\|\|4_665	A	17\|\|\|\|4_665	G	18\|\|\|\|4_665	cWW		cwW	ncBW	cWW
4	IL_3LOA_001	3LOA	0.6669	0	UAA/GAN variation	A+B	RNA (21-mer) + RNA (23-mer)	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW		ncWW		cWW
5	IL_4V5O_120	4V5O	0.7753	1	UAA/GAN variation	BA	SSU rRNA	U	728	U	729	A	730	C	731	*	G	784	G	785	A	787	U	788	A	789	cWW		ncwW	ncWW	cWW
6	IL_3IGI_009	3IGI	0.3003	0	UAA/GAN related	A	Group IIC intron	U	172	G	173	A	174	G	175	*	C	190	A	191	A	192	A	193	G	194	cWW	tSH		tHS	cWW
7	IL_4V8P_183	4V8P	0.2727	0	UAA/GAN variation	D1	LSU rRNA	U	571	G	572	A	573	G	574	*	C	594	A	595	A	596	A	597	A	598	cWW	ntSH		tHS	cWW
8	IL_4V8P_179	4V8P	0.2367	0	UAA/GAN variation	D1	LSU rRNA	U	499	G	500	A	501	G	502	*	C	475	A	476	G	477	A	478	G	479	cWW	tSH		ntHS	cWW
9	IL_2R8S_002	2R8S	0.2868	0	UAA/GAN variation	R	P4-P6 RNA RIBOZYME DOMAIN	U	205	A	206	A	207	C	208	*	G	112	A	113	A	114	A	115	G	116	cWW	tSH		tHS	cWW
10	IL_5J7L_317	5J7L	0.0000	0	UAA/GAN variation	DA	LSU rRNA	U	1864	U	1865	A	1866	G	1867	*	C	1874	G	1875	A	1876	A	1877	G	1878	cWW			tHS	cWW
11	IL_4V8P_278	4V8P	0.2826	2	UAA/GAN variation	D1	LSU rRNA	U	3043	A	3044	A	3046	A	3048	*	U	3073	G	3074	A	3075	A	3076	G	3077	cWW			tHS	cWW
12	IL_3FTM_002	3FTM	0.3053	0	UAA/GAN variation	C+D	RNA (11-mer) + RNA (12-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	cWW			ntHS	cWW
13	IL_3FS0_001	3FS0	0.4073	0	UAA/GAN related	A+B	RNA (10-mer) + RNA (11-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	cWW	nthH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CACC*GCAAG	3
UGAG*CGGAA	2
GCCC*GUAAC	1
UUAC*GGAAUA	1
UGAG*CAAAG	1
UGAG*CAAAA	1
UGAG*CAGAG	1
UAAC*GAAAG	1
UUAG*CGAAG	1
UAAAUA*UGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AC*CAA	3
GA*AAA	2
GA*GGA	2
CC*UAA	1
UA*GAAU	1
GA*AGA	1
AA*AAA	1
UA*GAA	1
AAAU*GAA	1

Release history

Release	3.8	3.9	3.10	3.11
Date	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN variation (8)
Tandem non-canonical cWW pairs (2)
UAA/GAN related (2)
Minor groove platform related (1)
Basepair signature: cWW-R-tSH-tHS-cWW
Heat map statistics: Min 0.16 | Avg 0.53 | Max 0.92

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