IL_4V5O_129

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85877.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

68

Unit IDs

4V5O|1|BA|G|1019
4V5O|1|BA|G|1020
4V5O|1|BA|A|1021
4V5O|1|BA|U|1022
*
4V5O|1|BA|G|1046
4V5O|1|BA|C|1047
4V5O|1|BA|A|1048
4V5O|1|BA|C|1049

Current chains

Chain BA

18S RRNA

Nearby chains

Chain B4

40S RIBOSOMAL PROTEIN S3A

Chain B5

RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN

Chain BB

RPS0E

Chain BO

RPS13E